Next, imitate the method above, input used to set up the other three departments and employees folder MD command.
接下来，模仿上面的方法，输入用来建立其他三个部门和员工文件夹的MD命令。
2
The READE (Rare Event Algorithm with Dose Effect) method can well speed up the MD simulation of ion implantation with dose effect.
（包含剂量效应的稀有事件算法）方法可以很好的加速含剂量效应的离子注入的分子动力学模拟。
3
In this method, we compared the effect on discriminating near-native structures of different scoring functions, energy minimization (EM) and molecule dynamics (MD).